GRIFn: Advanced evaluation

Choose a name, type of evaluation, and the datasets you would like to evaluate below. General evaluations can be used to determine the overall quality of a dataset as measured by our GO-based functional gold standard described here. Specific GO terms can be excluded from a general evaluation by entering them in the first text box. Process-specific evaluations can be used to explicitly measure the functional signal in a dataset for target processes. A default set of 32 GO terms (GO Slim) is provided or you can enter your own set in the second text box below.

Evaluation name:

Evaluation type
General evaluation (GO-based functional gold standard)
AND exclude these GO terms (enter GO IDs, e.g. GO:0007046):

Process-specific evaluation (default 32 GO Slim terms)
OR evaluate on these GO terms (enter GO IDs, e.g. GO:0007046):

Select datasets to evaluate

	ID	Name	Status
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Select additional reference datasets for comparison

Name	Description	Pubmed ID
Gavin et al. Aff. precipitation	Functional organization of the yeast proteome by systematic analysis of protein complexes. Gavin AC, Bosche M...	11805826
Ho et al. Aff. precipitation	Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Ho Y, Gruhle...	11805837
Tong et al. Synthetic lethality	Global mapping of the yeast genetic interaction network. Tong AH, Lesage G, Bader GD, Ding H, Xu H, Xin X, Yo...	14764870
Uetz et al. Two hybrid	A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Uetz P, Giot L, Cagney ...	10688190
Ito (2000) et al. Two hybrid	Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in...	10655498
Ito (2001) et al. Two hybrid	A comprehensive two-hybrid analysis to explore the yeast protein interactome. Ito T, Chiba T, Ozawa R, Yoshid...	11283351
Tong et al. Two hybrid	A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules.<...	11743162
Fromont-Racine et al. Two hybrid	Toward a functional analysis of the yeast genome through exhaustive two-hybrid screens. Fromont-Racine M, Rain...	9207794
Drees et al. Two hybrid	A protein interaction map for cell polarity development. Drees BL, Sundin B, Brazeau E, Caviston JP, Chen GC, ...	11489916
Gasch (2001) et al. Microarray expression	Genomic expression responses to DNA-damaging agents and the regulatory role of the yeast ATR homolog Mec1p. G...	11102521
Gasch (2000) et al. Microarray expression	Genomic expression programs in the response of yeast cells to environmental changes. Gasch AP, Spellman PT, K...	11598186
Spellman et al. Microarray expression	Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization...	9843569
Combined microarray correlation	Correlation computed over 10 microarray studies.